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  5. LOC_Os08g40140

LOC_Os08g40140


Description : geranylgeranyl transferase type-2 subunit beta, putative, expressed


Gene families : OG_42_0004916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g40140
Cluster HCCA clusters: cluster_0087

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G111200 No alias RAB geranylgeranyl transferase beta subunit 1 0.03 Orthogroups_2024-Update
Pp1s163_87V6 No alias geranylgeranyl transferase type ii beta 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005758 mitochondrial intermembrane space IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016530 metallochaperone activity IEP Predicted GO
MF GO:0016531 copper chaperone activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031970 organelle envelope lumen IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001330 PFTB_repeat 58 97
IPR001330 PFTB_repeat 152 195
IPR001330 PFTB_repeat 105 147
IPR001330 PFTB_repeat 248 291
IPR001330 PFTB_repeat 200 243
No external refs found!