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  5. LOC_Os08g40310

LOC_Os08g40310


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g40310
Cluster HCCA clusters: cluster_0039

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G106653 No alias FAR1-related sequence 6 0.02 Orthogroups_2024-Update
Glyma.04G193200 No alias FAR1-related sequence 5 0.04 Orthogroups_2024-Update
Glyma.06G229800 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Glyma.20G132100 No alias FRS (FAR1 Related Sequences) transcription factor family 0.04 Orthogroups_2024-Update
HORVU2Hr1G063550.3 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
HORVU5Hr1G056070.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Solyc06g068210 No alias Protein FAR1-RELATED SEQUENCE 8 (AHRD V3.3 *** W9RSB0_9ROSA) 0.02 Orthogroups_2024-Update
Sopen02g017690 No alias FAR1 DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen03g040440 No alias FAR1 DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen06g030080 No alias MULE transposase domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 509 602
IPR007527 Znf_SWIM 778 810
No external refs found!