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  5. LOC_Os08g43120

LOC_Os08g43120


Description : Plant PDR ABC transporter associated domain containing protein, expressed


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g43120
Cluster HCCA clusters: cluster_0044

Target Alias Description ECC score Gene Family Method Actions
441717 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
A4A49_31699 No alias pleiotropic drug resistance protein 2 0.02 Orthogroups_2024-Update
At1g15520 No alias ABC transporter G family member 40... 0.02 Orthogroups_2024-Update
At1g59870 No alias ABC transporter G family member 36... 0.02 Orthogroups_2024-Update
Brara.C01827.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Brara.D02216.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Brara.F01033.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Brara.F01034.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Cre07.g313250 No alias pleiotropic drug resistance 6 0.01 Orthogroups_2024-Update
GRMZM2G143139 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.06G071800 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.13G361900 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.17G039300 No alias pleiotropic drug resistance 9 0.02 Orthogroups_2024-Update
LOC_Os01g08260 No alias pleiotropic drug resistance protein 4, putative, expressed 0.03 Orthogroups_2024-Update
MA_17319g0020 No alias (q76cu2|pdr1_tobac : 630.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
MA_249533g0010 No alias (at2g29940 : 311.0) pleiotropic drug resistance 3... 0.02 Orthogroups_2024-Update
Mp2g07030.1 No alias subfamily ABCG transporter 0.01 Orthogroups_2024-Update
PSME_00001761-RA No alias (q5z9s8|pdr12_orysa : 1822.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00015316-RA No alias (q2pcf1|pdr2_nicpl : 1867.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
PSME_00019551-RA No alias (q76cu2|pdr1_tobac : 1217.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
Potri.001G175700 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Potri.003G179000 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Potri.018G074500 No alias pleiotropic drug resistance 4 0.03 Orthogroups_2024-Update
Sobic.003G215800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G216000.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.004G254100.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Solyc01g101070 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc12g100180 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen05g033770 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update
Sopen09g034570 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1049 1261
IPR013525 ABC_2_trans 410 621
IPR013581 PDR_assoc 626 690
IPR003439 ABC_transporter-like 751 902
IPR003439 ABC_transporter-like 103 255
No external refs found!