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  5. LOC_Os08g44020

LOC_Os08g44020


Description : rhamnogalacturonate lyase, putative, expressed


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os08g44020
Cluster HCCA clusters: cluster_0113

Target Alias Description ECC score Gene Family Method Actions
Bradi4g26420 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.04G091066 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G026250.3 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_10429122g0010 No alias (at1g09910 : 290.0) Rhamnogalacturonate lyase family... 0.02 Orthogroups_2024-Update
Mp2g13590.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Potri.002G110000 No alias Rhamnogalacturonate lyase family protein 0.02 Orthogroups_2024-Update
Potri.006G253601 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Pp1s117_149V6 No alias lg27 30-like gene 0.02 Orthogroups_2024-Update
Solyc11g011300 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0051011 microtubule minus-end binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 464 652
IPR029413 RG-lyase_II 378 449
IPR010325 Rhamnogal_lyase 14 224
No external refs found!