1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g075700

Solyc08g075700


Description : 60S ribosomal protein L13 (AHRD V3.3 *** K4CMT7_SOLLC)


Gene families : OG_42_0002061 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002061_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g075700
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
165483 No alias breast basic conserved 1 0.09 Orthogroups_2024-Update
266648 No alias breast basic conserved 1 0.03 Orthogroups_2024-Update
A4A49_61903 No alias 60s ribosomal protein l13-1 0.16 Orthogroups_2024-Update
At3g49010 No alias 60S ribosomal protein L13... 0.07 Orthogroups_2024-Update
At5g23900 No alias 60S ribosomal protein L13... 0.05 Orthogroups_2024-Update
Bradi3g01600 No alias breast basic conserved 1 0.26 Orthogroups_2024-Update
Bradi3g16170 No alias breast basic conserved 1 0.19 Orthogroups_2024-Update
Brara.A02197.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.32 Orthogroups_2024-Update
Brara.F01634.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.43 Orthogroups_2024-Update
Brara.F02079.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.29 Orthogroups_2024-Update
Brara.I00594.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre14.g630100 No alias breast basic conserved 1 0.21 Orthogroups_2024-Update
Glyma.04G122700 No alias breast basic conserved 1 0.21 Orthogroups_2024-Update
Glyma.09G214400 No alias breast basic conserved 1 0.2 Orthogroups_2024-Update
Glyma.16G074600 No alias breast basic conserved 1 0.09 Orthogroups_2024-Update
Glyma.16G106300 No alias breast basic conserved 1 0.11 Orthogroups_2024-Update
HORVU6Hr1G009400.2 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
HORVU7Hr1G067060.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Kfl00461_0040 kfl00461_0040_v1.1 (p41129|rl132_brana : 229.0) 60S ribosomal protein L13-2... 0.22 Orthogroups_2024-Update
LOC_Os03g37970 No alias ribosomal protein L13, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g02510 No alias ribosomal protein L13, putative, expressed 0.04 Orthogroups_2024-Update
MA_10430790g0030 No alias (at3g49010 : 263.0) Encodes 60S ribosomal protein L13.... 0.08 Orthogroups_2024-Update
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.11 Orthogroups_2024-Update
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.23 Orthogroups_2024-Update
PSME_00003763-RA No alias (at3g49010 : 179.0) Encodes 60S ribosomal protein L13.... 0.13 Orthogroups_2024-Update
PSME_00040067-RA No alias (at3g49010 : 296.0) Encodes 60S ribosomal protein L13.... 0.05 Orthogroups_2024-Update
PSME_00045638-RA No alias (at3g49010 : 335.0) Encodes 60S ribosomal protein L13.... 0.08 Orthogroups_2024-Update
Potri.003G102800 No alias breast basic conserved 1 0.15 Orthogroups_2024-Update
Potri.013G027600 No alias breast basic conserved 1 0.08 Orthogroups_2024-Update
Potri.016G082300 No alias breast basic conserved 1 0.1 Orthogroups_2024-Update
Pp1s21_106V6 No alias 60s ribosomal protein l13-2 0.42 Orthogroups_2024-Update
Pp1s459_9V6 No alias 60s ribosomal protein l13-2 0.38 Orthogroups_2024-Update
Pp1s58_38V6 No alias 60s ribosomal protein l13-2 0.09 Orthogroups_2024-Update
Seita.5G275700.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Seita.5G276200.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Sobic.003G408100.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.43 Orthogroups_2024-Update
Sobic.009G065400.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.34 Orthogroups_2024-Update
Sobic.009G237200.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sopen08g024350 No alias Ribosomal protein L13e 0.48 Orthogroups_2024-Update
Sopen12g032030 No alias Ribosomal protein L13e 0.17 Orthogroups_2024-Update
evm.model.contig_2033.18 No alias (at3g49010 : 217.0) Encodes 60S ribosomal protein L13.... 0.53 Orthogroups_2024-Update
evm.model.tig00020629.36 No alias (p41128|rl131_brana : 211.0) 60S ribosomal protein L13-1... 0.35 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 6 184
No external refs found!