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  5. LOC_Os09g01960

LOC_Os09g01960


Description : MYB family transcription factor, putative, expressed


Gene families : OG_42_0000047 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g01960
Cluster HCCA clusters: cluster_0039

Target Alias Description ECC score Gene Family Method Actions
At1g26780 No alias MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3] 0.03 Orthogroups_2024-Update
At2g13960 No alias At2g13960 [Source:UniProtKB/TrEMBL;Acc:Q29PZ8] 0.02 Orthogroups_2024-Update
At5g39700 No alias Myb domain protein 89 [Source:UniProtKB/TrEMBL;Acc:Q9SPG4] 0.03 Orthogroups_2024-Update
Cre16.g677382 No alias myb domain protein r1 0.01 Orthogroups_2024-Update
GRMZM2G050550 No alias myb domain protein r1 0.02 Orthogroups_2024-Update
HORVU1Hr1G060030.1 No alias MYB class-R2R3 subgroup-22/23 transcription factor 0.03 Orthogroups_2024-Update
Mp3g02830.1 No alias transcription factor (MYB) 0.02 Orthogroups_2024-Update
Potri.002G073500 No alias myb domain protein 52 0.03 Orthogroups_2024-Update
Pp1s76_66V6 No alias F24J1.31; myb family transcription factor (MYB105)... 0.02 Orthogroups_2024-Update
Sobic.004G070900.1 No alias MYB class-R2R3 subgroup-22/23 transcription factor 0.02 Orthogroups_2024-Update
Solyc09g011780 No alias R2R3MYB transcription factor 1 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009539 photosystem II reaction center IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!