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  5. Solyc08g075940

Solyc08g075940


Description : DNA-directed RNA polymerase subunit beta (AHRD V3.3 *** K4CMW1_SOLLC)


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g075940
Cluster HCCA clusters: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
92553 No alias nuclear RNA polymerase D2A 0.04 Orthogroups_2024-Update
Glyma.01G006500 No alias nuclear RNA polymerase C2 0.03 Orthogroups_2024-Update
MA_342841g0010 No alias (at5g45140 : 314.0) Encodes a subunit of RNA polymerase... 0.03 Orthogroups_2024-Update
Potri.015G003000 No alias nuclear RNA polymerase C2 0.02 Orthogroups_2024-Update
Pp1s13_317V6 No alias rna polymerase ii second largest subunit 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR007647 RNA_pol_Rpb2_5 690 737
IPR007644 RNA_pol_bsu_protrusion 80 473
IPR007641 RNA_pol_Rpb2_7 1119 1216
IPR007646 RNA_pol_Rpb2_4 610 670
IPR007642 RNA_pol_Rpb2_2 306 437
IPR007645 RNA_pol_Rpb2_3 513 573
IPR007120 DNA-dir_RNAP_su2_dom 747 1117
No external refs found!