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  5. LOC_Os09g02780

LOC_Os09g02780


Description : OsMADS77 - MADS-box family gene with M-alpha type-box, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g02780
Cluster HCCA clusters: cluster_0014

Target Alias Description ECC score Gene Family Method Actions
Brara.B03164.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.G02489.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
HORVU1Hr1G029220.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g10504 No alias OsMADS3 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g11614 No alias OsMADS1 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g23950 No alias OsMADS59 - MADS-box family gene with MIKCc type-box 0.02 Orthogroups_2024-Update
PSME_00039603-RA No alias (q7xun2|mad17_orysa : 111.0) MADS-box transcription... 0.03 Orthogroups_2024-Update
Potri.012G062300 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Sopen01g026520 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update
Sopen02g033990 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update
Sopen04g001300 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update
Sopen06g023350 No alias K-box region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 2 43
No external refs found!