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  5. Solyc08g076150

Solyc08g076150


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GMW9_POPTR)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g076150
Cluster HCCA clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
113567 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
131810 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.05 Orthogroups_2024-Update
At1g31920 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Orthogroups_2024-Update
At2g33760 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.03 Orthogroups_2024-Update
Bradi1g56040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g54927 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.E01323.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
Brara.E01751.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G01254.1 No alias RNA editing factor *(CREF7) 0.02 Orthogroups_2024-Update
Brara.H00716.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G045154 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G399433 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G011300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G264700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G160300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.17G024900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G083680.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G107430.1 No alias RNA editing factor *(MEF10) 0.02 Orthogroups_2024-Update
HORVU5Hr1G113840.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g34700 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os02g46980 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g08680 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08650 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_11074g0010 No alias (at3g57430 : 561.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_153011g0010 No alias (at5g52630 : 607.0) Encodes a member of the DYW... 0.02 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.02 Orthogroups_2024-Update
PSME_00022741-RA No alias (at4g18750 : 598.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
PSME_00056680-RA No alias (at2g22070 : 511.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Potri.001G135400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G272600.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.008G047100.1 No alias RNA editing factor *(REME2/PGL1) 0.03 Orthogroups_2024-Update
Solyc12g096510 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g039430 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen08g024790 No alias PPR repeat 0.08 Orthogroups_2024-Update
Sopen10g006390 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016987 sigma factor activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 373 397
IPR002885 Pentatricopeptide_repeat 199 228
IPR002885 Pentatricopeptide_repeat 170 195
IPR032867 DYW_dom 472 595
IPR002885 Pentatricopeptide_repeat 95 143
IPR002885 Pentatricopeptide_repeat 297 345
No external refs found!