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  5. LOC_Os09g07120

LOC_Os09g07120


Description : DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed


Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g07120
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
Bradi4g08880 No alias DNA/RNA polymerases superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00618.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.04 Orthogroups_2024-Update
Glyma.18G276200 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G181100 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G112800 No alias male gametophyte defective 3 0.02 Orthogroups_2024-Update
Potri.018G103300 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Pp1s256_41V6 No alias rna polymerase 0.03 Orthogroups_2024-Update
Seita.2G155900.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.05 Orthogroups_2024-Update
Sobic.010G211500.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.02 Orthogroups_2024-Update
Solyc02g089340 No alias DNA-directed RNA polymerase (AHRD V3.3 *** K4BC86_SOLLC) 0.02 Orthogroups_2024-Update
Sopen05g006460 No alias DNA-dependent RNA polymerase 0.02 Orthogroups_2024-Update
evm.model.contig_511.3 No alias (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
evm.model.tig00021493.48 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00021493.49 No alias (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR029262 RPOL_N 183 503
IPR002092 DNA-dir_Rpol_phage-type 626 1017
No external refs found!