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  5. Solyc01g088710

Solyc01g088710


Description : Metacaspase-1 (AHRD V3.3 *** M9WJ17_VITVI),Pfam:PF00656


Gene families : OG_42_0001162 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g088710
Cluster HCCA clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
Solyc01g105320 No alias Metacaspase 1, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
evm.model.tig00020675.88 No alias (at1g02170 : 211.0) Metacaspase AtMCP1b.... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR005735 Znf_LSD1 7 31
No external refs found!