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Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* D7MRC5_ARALL)
Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc08g077120 | |
| Cluster | HCCA clusters: Cluster_152 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At5g46580 | No alias | Pentatricopeptide repeat-containing protein At5g46580,... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g01021 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G017593 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.05G113300 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G013500 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G013600 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.15G118100 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G153900 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G124070.4 | No alias | endoribonuclease *(SOT1) | 0.03 | Orthogroups_2024-Update | |
| Potri.003G089600 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.05 | Orthogroups_2024-Update | |
| Pp1s220_57V6 | No alias | F10E10.5; pentatricopeptide (PPR) repeat-containing... | 0.02 | Orthogroups_2024-Update | |
| Pp1s258_9V6 | No alias | F10E10.5; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G455500.1 | No alias | plastidial RNA processing factor *(SVR7) | 0.03 | Orthogroups_2024-Update | |
| Sopen08g025700 | No alias | PPR repeat family | 0.1 | Orthogroups_2024-Update | |
| Sopen11g007400 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003747 | translation release factor activity | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Predicted GO |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
| BP | GO:0006415 | translational termination | IEP | Predicted GO |
| MF | GO:0008079 | translation termination factor activity | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0010215 | cellulose microfibril organization | IEP | Predicted GO |
| BP | GO:0016049 | cell growth | IEP | Predicted GO |
| MF | GO:0016149 | translation release factor activity, codon specific | IEP | Predicted GO |
| MF | GO:0016987 | sigma factor activity | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0019866 | organelle inner membrane | IEP | Predicted GO |
| BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| BP | GO:0022904 | respiratory electron transport chain | IEP | Predicted GO |
| BP | GO:0030198 | extracellular matrix organization | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| CC | GO:0031225 | anchored component of membrane | IEP | Predicted GO |
| CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| BP | GO:0040007 | growth | IEP | Predicted GO |
| BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Predicted GO |
| BP | GO:0043062 | extracellular structure organization | IEP | Predicted GO |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |