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  5. LOC_Os09g16290

LOC_Os09g16290


Description : ABC-2 type transporter, putative, expressed


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g16290
Cluster HCCA clusters: cluster_0010

Target Alias Description ECC score Gene Family Method Actions
441720 No alias pleiotropic drug resistance 7 0.02 Orthogroups_2024-Update
Bradi3g41987 No alias pleiotropic drug resistance 11 0.02 Orthogroups_2024-Update
HORVU3Hr1G053380.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
HORVU7Hr1G088600.8 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
LOC_Os01g42350 No alias pleiotropic drug resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00017479-RA No alias (q5z9s8|pdr12_orysa : 1136.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
Potri.001G048900 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Potri.010G153700 No alias pleiotropic drug resistance 9 0.02 Orthogroups_2024-Update
Pp1s72_306V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Sopen01g044530 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
Sopen05g032100 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1081 1294
IPR013525 ABC_2_trans 411 622
IPR003439 ABC_transporter-like 65 228
IPR029481 ABC_trans_N 3 39
IPR013581 PDR_assoc 627 684
IPR003439 ABC_transporter-like 783 935
No external refs found!