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  5. LOC_Os09g19280

LOC_Os09g19280


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000064 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g19280
Cluster HCCA clusters: cluster_0123

Target Alias Description ECC score Gene Family Method Actions
HORVU0Hr1G017960.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G338500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 79 268
IPR010685 DUF1263 21 76
No external refs found!