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  5. LOC_Os09g24240

LOC_Os09g24240


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0010278 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010278_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g24240
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G138012 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.2G173900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G167400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 384 431
IPR002885 Pentatricopeptide_repeat 158 187
IPR002885 Pentatricopeptide_repeat 220 249
IPR002885 Pentatricopeptide_repeat 251 280
IPR002885 Pentatricopeptide_repeat 528 553
IPR002885 Pentatricopeptide_repeat 282 311
IPR002885 Pentatricopeptide_repeat 189 218
No external refs found!