LOC_Os09g24850

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os09g24850
Cluster	HCCA clusters: cluster_0014

Target	Alias	Description	ECC score	Gene Family Method
HORVU0Hr1G014810.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU0Hr1G015300.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU0Hr1G039350.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU2Hr1G122960.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU6Hr1G002090.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU6Hr1G084730.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU7Hr1G038840.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os05g05880	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Sopen01g030720	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen09g024920	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
evm.model.tig00021758.17	No alias	(p31843\|rrpo_oenbe : 98.2) RNA-directed DNA polymerase...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	1011	1107
IPR000477	RT_dom	523	678
IPR005162	Retrotrans_gag_dom	340	425

External Links

No external refs found!