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  5. Solyc08g078010

Solyc08g078010


Description : Ribosomal protein L19 family protein (AHRD V3.3 *** AT4G17560.1)


Gene families : OG_42_0002220 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g078010
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
A4A49_09774 No alias 50s ribosomal protein l19-1, chloroplastic 0.03 Orthogroups_2024-Update
Bradi3g50390 No alias Ribosomal protein L19 family protein 0.07 Orthogroups_2024-Update
Brara.F03563.1 No alias component *(bL19c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.H00935.1 No alias component *(bL19c) of large plastid ribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Brara.I01980.1 No alias component *(bL19c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Cre17.g734450 No alias Ribosomal protein L19 family protein 0.1 Orthogroups_2024-Update
Glyma.01G205400 No alias Ribosomal protein L19 family protein 0.07 Orthogroups_2024-Update
Glyma.11G037500 No alias Ribosomal protein L19 family protein 0.06 Orthogroups_2024-Update
HORVU6Hr1G062040.3 No alias component *(bL19c) of large plastid ribosomal-subunit proteome 0.12 Orthogroups_2024-Update
MA_947876g0010 No alias (at4g17560 : 107.0) Ribosomal protein L19 family... 0.05 Orthogroups_2024-Update
Mp3g02740.1 No alias component mtRPL19 of large ribosomal subunit proteome.... 0.04 Orthogroups_2024-Update
PSME_00048646-RA No alias (at4g17560 : 115.0) Ribosomal protein L19 family... 0.03 Orthogroups_2024-Update
Potri.001G152200 No alias Ribosomal protein L19 family protein 0.08 Orthogroups_2024-Update
Seita.1G256000.1 No alias component *(bL19c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Sobic.004G298100.1 No alias component *(bL19c) of large plastid ribosomal-subunit proteome 0.12 Orthogroups_2024-Update
Sopen08g026520 No alias Ribosomal protein L19 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016149 translation release factor activity, codon specific IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001857 Ribosomal_L19 110 207
No external refs found!