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  5. LOC_Os09g25550

LOC_Os09g25550


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0007361 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007361_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g25550
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
Sobic.007G087100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc07g005950 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 753 782
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 374 398
IPR002885 Pentatricopeptide_repeat 648 674
IPR002885 Pentatricopeptide_repeat 613 642
IPR002885 Pentatricopeptide_repeat 787 817
IPR002885 Pentatricopeptide_repeat 543 566
IPR002885 Pentatricopeptide_repeat 719 747
IPR002885 Pentatricopeptide_repeat 579 604
IPR002885 Pentatricopeptide_repeat 477 503
IPR002885 Pentatricopeptide_repeat 889 936
IPR002885 Pentatricopeptide_repeat 823 864
IPR002885 Pentatricopeptide_repeat 401 448
No external refs found!