Solyc08g078190

Description : ethylene-responsive transcription factor

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc08g078190
Cluster	HCCA clusters: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
A4A49_06467	No alias	ethylene-responsive transcription factor crf4	0.03	Orthogroups_2024-Update
A4A49_16120	No alias	ethylene-responsive transcription factor erf061	0.03	Orthogroups_2024-Update
A4A49_17723	No alias	ethylene-responsive transcription factor 1	0.02	Orthogroups_2024-Update
A4A49_20932	No alias	ethylene-responsive transcription factor erf114	0.02	Orthogroups_2024-Update
A4A49_21042	No alias	ethylene-responsive transcription factor 4	0.03	Orthogroups_2024-Update
A4A49_23010	No alias	ethylene-responsive transcription factor 2	0.04	Orthogroups_2024-Update
A4A49_30738	No alias	ethylene-responsive transcription factor abr1	0.02	Orthogroups_2024-Update
A4A49_36835	No alias	ethylene-responsive transcription factor 5	0.03	Orthogroups_2024-Update
At1g28360	No alias	Ethylene-responsive transcription factor 12...	0.04	Orthogroups_2024-Update
At1g44830	No alias	Ethylene-responsive transcription factor ERF014...	0.03	Orthogroups_2024-Update
At3g60490	No alias	Ethylene-responsive transcription factor ERF035...	0.03	Orthogroups_2024-Update
At5g51190	No alias	Ethylene-responsive transcription factor ERF105...	0.02	Orthogroups_2024-Update
Bradi1g04110	No alias	cytokinin response factor 4	0.02	Orthogroups_2024-Update
Bradi1g23756	No alias	related to AP2 11	0.02	Orthogroups_2024-Update
Bradi4g03371	No alias	related to AP2 11	0.03	Orthogroups_2024-Update
Bradi4g29010	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Bradi5g16450	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Brara.A03436.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.02	Orthogroups_2024-Update
Brara.G02224.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Brara.H02380.1	No alias	subgroup ERF-II transcription factor *(ERF16/17/18)	0.02	Orthogroups_2024-Update
Brara.H02645.1	No alias	subgroup ERF-III transcription factor	0.02	Orthogroups_2024-Update
Brara.I00546.1	No alias	cutin and suberin biosynthesis transcription factor...	0.05	Orthogroups_2024-Update
Brara.I00667.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Brara.I03979.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Brara.I05105.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.I05601.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.J02660.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Brara.K00042.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G466044	No alias	ethylene responsive element binding factor 1	0.03	Orthogroups_2024-Update
Glyma.02G006200	No alias	ethylene response factor 1	0.03	Orthogroups_2024-Update
Glyma.05G092800	No alias	cooperatively regulated by ethylene and jasmonate 1	0.02	Orthogroups_2024-Update
Glyma.05G186700	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.07G114000	No alias	ethylene-responsive element binding factor 13	0.04	Orthogroups_2024-Update
Glyma.08G137600	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.10G016500	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.11G035100	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.13G040400	No alias	cytokinin response factor 4	0.02	Orthogroups_2024-Update
Glyma.13G122600	No alias	ethylene response factor 1	0.02	Orthogroups_2024-Update
Glyma.14G205600	No alias	cytokinin response factor 4	0.04	Orthogroups_2024-Update
Glyma.17G124100	No alias	related to AP2 11	0.02	Orthogroups_2024-Update
Glyma.19G164100	No alias	ethylene response factor 1	0.02	Orthogroups_2024-Update
HORVU6Hr1G060140.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
HORVU6Hr1G062430.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
LOC_Os02g52670	No alias	AP2 domain containing protein, expressed	0.04	Orthogroups_2024-Update
LOC_Os06g06540	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g11460	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g11480	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g41130	No alias	AP2 domain containing protein, expressed	0.05	Orthogroups_2024-Update
MA_8552524g0010	No alias	(q9lw50\|erf2_nicsy : 135.0) Ethylene-responsive...	0.02	Orthogroups_2024-Update
PSME_00005187-RA	No alias	(at4g17500 : 144.0) Encodes a member of the ERF...	0.03	Orthogroups_2024-Update
PSME_00041310-RA	No alias	(at1g75490 : 82.8) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
Potri.001G154100	No alias	ethylene responsive element binding factor 1	0.03	Orthogroups_2024-Update
Potri.001G154200	No alias	ethylene responsive element binding factor 5	0.02	Orthogroups_2024-Update
Potri.006G069400	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Potri.006G218200	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.007G138100	No alias	erf domain protein 9	0.03	Orthogroups_2024-Update
Potri.019G131300	No alias	cytokinin response factor 4	0.02	Orthogroups_2024-Update
Seita.1G187800.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.1G257300.1	No alias	subgroup ERF-IX transcription factor	0.04	Orthogroups_2024-Update
Seita.2G156200.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Seita.3G191900.1	No alias	subgroup ERF-VIII transcription factor	0.03	Orthogroups_2024-Update
Seita.4G051200.1	No alias	subgroup ERF-V transcription factor	0.02	Orthogroups_2024-Update
Seita.6G181700.1	No alias	subgroup ERF-X transcription factor	0.02	Orthogroups_2024-Update
Seita.7G176700.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
Sobic.004G319700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.005G103100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.006G168000.1	No alias	subgroup ERF-IX transcription factor	0.02	Orthogroups_2024-Update
Solyc03g006320	No alias	Ethylene-responsive transcription factor, putative (AHRD...	0.03	Orthogroups_2024-Update
Solyc04g054910	No alias	Ethylene-responsive element binding-factor (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc05g051180	No alias	Ethylene-responsive transcription factor (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc08g078180	No alias	Ethylene Response Factor A.1	0.04	Orthogroups_2024-Update
Solyc09g089910	No alias	Ethylene-responsive transcription factor (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
Solyc11g012980	No alias	Ethylene-responsive transcription factor (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen02g037700	No alias	AP2 domain	0.03	Orthogroups_2024-Update
Sopen10g008890	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Predicted GO
BP	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predicted GO
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predicted GO
MF	GO:0004532	exoribonuclease activity	IEP	Predicted GO
MF	GO:0004535	poly(A)-specific ribonuclease activity	IEP	Predicted GO
BP	GO:0006401	RNA catabolic process	IEP	Predicted GO
BP	GO:0006402	mRNA catabolic process	IEP	Predicted GO
BP	GO:0007059	chromosome segregation	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predicted GO
BP	GO:0051301	cell division	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	183	233

External Links

No external refs found!

Solyc08g078190

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation