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LOC_Os09g28680


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g28680
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
Sopen05g018820 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g026230 No alias GAG-pre-integrase domain 0.02 Orthogroups_2024-Update
Sopen07g028620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1084 1198
IPR025724 GAG-pre-integrase_dom 1007 1069
IPR013103 RVT_2 1453 1694
No external refs found!