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  5. LOC_Os09g29930

LOC_Os09g29930


Description : transcription factor BIM2, putative, expressed


Gene families : OG_42_0001713 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001713_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g29930
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G089501 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Mp4g12420.1 No alias transcription factor (bHLH) 0.02 Orthogroups_2024-Update
PSME_00001997-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Pp1s211_76V6 No alias transcription factor 0.02 Orthogroups_2024-Update
Seita.1G303900.1 No alias bHLH-type transcription factor 0.01 Orthogroups_2024-Update
Seita.6G192000.1 No alias bHLH-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.007G223300.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Sopen03g033800 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen06g026630 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
CC GO:0000139 Golgi membrane IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008987 quinolinate synthetase A activity IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 219 268
No external refs found!