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  5. Solyc08g078570

Solyc08g078570


Description : Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061G554_THECC)


Gene families : OG_42_0010261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010261_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g078570
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
PSME_00040107-RA No alias (at4g13650 : 489.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Sopen08g027050 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 252 278
IPR002885 Pentatricopeptide_repeat 387 406
IPR002885 Pentatricopeptide_repeat 283 308
IPR002885 Pentatricopeptide_repeat 490 518
IPR002885 Pentatricopeptide_repeat 223 249
IPR002885 Pentatricopeptide_repeat 311 359
IPR002885 Pentatricopeptide_repeat 412 460
IPR002885 Pentatricopeptide_repeat 148 195
No external refs found!