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LOC_Os09g32210


Description : pumilio-family RNA binding repeat containing protein, expressed


Gene families : OG_42_0003031 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g32210
Cluster HCCA clusters: cluster_0045

Target Alias Description ECC score Gene Family Method Actions
A4A49_21311 No alias pumilio-like 5 0.03 Orthogroups_2024-Update
Glyma.13G099300 No alias pumilio 5 0.03 Orthogroups_2024-Update
Glyma.17G060766 No alias pumilio 6 0.02 Orthogroups_2024-Update
Glyma.17G060832 No alias pumilio 6 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 688 720
IPR001313 Pumilio_RNA-bd_rpt 802 821
IPR001313 Pumilio_RNA-bd_rpt 652 685
IPR001313 Pumilio_RNA-bd_rpt 835 865
IPR001313 Pumilio_RNA-bd_rpt 724 753
IPR001313 Pumilio_RNA-bd_rpt 870 901
IPR001313 Pumilio_RNA-bd_rpt 760 788
IPR001313 Pumilio_RNA-bd_rpt 913 938
No external refs found!