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  5. LOC_Os09g39180

LOC_Os09g39180


Description : RNA recognition motif containing protein, putative, expressed


Gene families : OG_42_0004215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os09g39180
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
Bradi3g42700 No alias 31-kDa RNA binding protein 0.02 Orthogroups_2024-Update
Brara.A01480.1 No alias plastidial ribonucleoprotein *(CP31) 0.03 Orthogroups_2024-Update
Brara.H01598.1 No alias plastidial ribonucleoprotein *(CP31) 0.04 Orthogroups_2024-Update
Brara.K01485.1 No alias plastidial ribonucleoprotein *(CP31) 0.03 Orthogroups_2024-Update
PSME_00013463-RA No alias (p19683|roc4_nicsy : 241.0) 31 kDa ribonucleoprotein,... 0.02 Orthogroups_2024-Update
Seita.6G245600.1 No alias plastidial ribonucleoprotein *(CP31) 0.03 Orthogroups_2024-Update
evm.model.tig00000944.16 No alias (at5g50250 : 101.0) Encodes a RNA binding protein. A... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 145 214
IPR000504 RRM_dom 239 309
No external refs found!