LOC_Os10g01750

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os10g01750
Cluster	HCCA clusters: cluster_0025

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os07g25360	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g03180	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g40800	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Pp1s132_22V6	No alias	No description available	0.02	Orthogroups_2024-Update
Sobic.008G183150.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sopen01g010850	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004601	peroxidase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
MF	GO:0016209	antioxidant activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	None	Extended
MF	GO:0020037	heme binding	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0017004	cytochrome complex assembly	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025314	DUF4219	11	35
IPR002016	Haem_peroxidase_pln/fun/bac	1178	1310
IPR013103	RVT_2	796	1027
IPR001584	Integrase_cat-core	437	554
IPR025724	GAG-pre-integrase_dom	364	423

External Links

No external refs found!

LOC_Os10g01750

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation