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  5. Solyc08g080550

Solyc08g080550


Description : Dead box ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RC60_RICCO)


Gene families : OG_42_0005941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g080550
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
43111 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Bradi3g49680 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Brara.H02641.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre07.g349300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.08G162000 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Kfl00028_0300 kfl00028_0300_v1.1 (at1g12770 : 370.0) Encodes a DEAD-box RNA helicase that... 0.02 Orthogroups_2024-Update
PSME_00017117-RA No alias (at1g12770 : 542.0) Encodes a DEAD-box RNA helicase that... 0.02 Orthogroups_2024-Update
Pp1s30_42V6 No alias dead deah box helicase domain protein 0.02 Orthogroups_2024-Update
Seita.1G246400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G225600.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen08g028870 No alias DEAD/DEAH box helicase 0.06 Orthogroups_2024-Update
evm.model.tig00021346.2 No alias (at1g12770 : 94.4) Encodes a DEAD-box RNA helicase that ... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016987 sigma factor activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
BP GO:0042274 ribosomal small subunit biogenesis IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 132 326
IPR001650 Helicase_C 400 505
No external refs found!