LOC_Os10g16480

Description : retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os10g16480
Cluster	HCCA clusters: cluster_0132

Target	Alias	Description	ECC score	Gene Family Method
Glyma.14G183700	No alias	Function unknown	0.02	Orthogroups_2024-Update
LOC_Os03g53550	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g09060	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g21350	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Sopen01g036870	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen07g008930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
evm.model.contig_3474.1	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Predicted GO
MF	GO:0004536	deoxyribonuclease activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0008297	single-stranded DNA exodeoxyribonuclease activity	IEP	Predicted GO
MF	GO:0008409	5'-3' exonuclease activity	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0035312	5'-3' exodeoxyribonuclease activity	IEP	Predicted GO
MF	GO:0045145	single-stranded DNA 5'-3' exodeoxyribonuclease activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	1454	1561
IPR005162	Retrotrans_gag_dom	429	524
IPR000477	RT_dom	917	1075

External Links

No external refs found!