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  5. LOC_Os10g17470

LOC_Os10g17470


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g17470
Cluster HCCA clusters: cluster_0133

Target Alias Description ECC score Gene Family Method Actions
Cre01.g006402 No alias Function unknown 0.01 Orthogroups_2024-Update
Cre03.g208557 No alias Function unknown 0.02 Orthogroups_2024-Update
Cre05.g235400 No alias methyl-CPG-binding domain 9 0.02 Orthogroups_2024-Update
Cre17.g733425 No alias Function unknown 0.01 Orthogroups_2024-Update
HORVU4Hr1G045110.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g052420 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g009040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen03g019160 No alias Reverse transcriptase-like 0.02 Orthogroups_2024-Update
Sopen05g016830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g008750 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen06g009540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g016840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g012430 No alias Apocytochrome F, C-terminal 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000477 RT_dom 436 583
IPR005162 Retrotrans_gag_dom 146 238
No external refs found!