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  5. LOC_Os10g21350

LOC_Os10g21350


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g21350
Cluster HCCA clusters: cluster_0094

Target Alias Description ECC score Gene Family Method Actions
Cre05.g235400 No alias methyl-CPG-binding domain 9 0.02 Orthogroups_2024-Update
HORVU0Hr1G030570.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G007530.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU1Hr1G011060.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G122960.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G038840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g45290 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g29700 No alias retrotransposon, putative, centromere-specific, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g16480 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.03 Orthogroups_2024-Update
Sopen07g012430 No alias Apocytochrome F, C-terminal 0.03 Orthogroups_2024-Update
Sopen08g006680 No alias Integrase core domain 0.02 Orthogroups_2024-Update
evm.model.tig00000158.97 No alias (atmg00860 : 98.6) hypothetical protein; DNA/RNA... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 866 975
IPR000477 RT_dom 539 698
IPR005162 Retrotrans_gag_dom 116 211
No external refs found!