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  5. LOC_Os10g26330

LOC_Os10g26330


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g26330
Cluster HCCA clusters: cluster_0053

Target Alias Description ECC score Gene Family Method Actions
Sopen00g009240 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g015750 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen08g012530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g025380 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0017148 negative regulation of translation IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030597 RNA glycosylase activity IEP Predicted GO
MF GO:0030598 rRNA N-glycosylase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!