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  5. LOC_Os10g27174

LOC_Os10g27174


Description : 40S ribosomal protein S28, putative, expressed


Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g27174
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
At5g64140 No alias RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91] 0.02 Orthogroups_2024-Update
Bradi4g13890 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
Brara.C00134.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre12.g510450 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
GRMZM2G124143 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
GRMZM2G455828 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Pp1s21_362V6 No alias 40s ribosomal protein s28 0.02 Orthogroups_2024-Update
Pp1s279_27V6 No alias 40s ribosomal protein s28 0.02 Orthogroups_2024-Update
Pp1s34_107V6 No alias 40s ribosomal protein s28 0.02 Orthogroups_2024-Update
Sobic.001G493001.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc02g021400 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 4 64
No external refs found!