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Description : pentatricopeptide, putative, expressed
Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza release: LOC_Os10g35750 | |
| Cluster | HCCA clusters: cluster_0059 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At3g11350 | No alias | Pentatricopeptide repeat (PPR) superfamily protein... | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G130366 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G000600 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.02 | Orthogroups_2024-Update | |
| HORVU1Hr1G045170.4 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU2Hr1G093220.6 | No alias | splicing factor *(CRR16) | 0.04 | Orthogroups_2024-Update | |
| Potri.003G193600 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.02 | Orthogroups_2024-Update | |
| Seita.2G083900.1 | No alias | RNA editing factor *(POCO) | 0.02 | Orthogroups_2024-Update | |
| Seita.2G158100.1 | No alias | splicing factor *(CRR16) | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G078100.1 | No alias | RNA editing factor *(POCO) | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G144000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G252200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc02g078330 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
| Sopen01g035710 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| CC | GO:0000313 | organellar ribosome | IEP | Predicted GO |
| MF | GO:0004779 | sulfate adenylyltransferase activity | IEP | Predicted GO |
| MF | GO:0004781 | sulfate adenylyltransferase (ATP) activity | IEP | Predicted GO |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
| CC | GO:0005761 | mitochondrial ribosome | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
| MF | GO:0016759 | cellulose synthase activity | IEP | Predicted GO |
| MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| CC | GO:0019867 | outer membrane | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| BP | GO:0030243 | cellulose metabolic process | IEP | Predicted GO |
| BP | GO:0030244 | cellulose biosynthetic process | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| CC | GO:0030915 | Smc5-Smc6 complex | IEP | Predicted GO |
| CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
| CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
| CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| MF | GO:0043531 | ADP binding | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
| CC | GO:0098798 | mitochondrial protein complex | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| CC | GO:0106068 | SUMO ligase complex | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| No external refs found! |