LOC_Os10g35840

Description : shikimate/quinate 5-dehydrogenase, putative, expressed

Gene families : OG_42_0003093 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os10g35840
Cluster	HCCA clusters: cluster_0073

Target	Alias	Description	ECC score	Gene Family Method
171031	No alias	Glutamyl-tRNA reductase family protein	0.03	Orthogroups_2024-Update
AC213521.3_FG005	No alias	Glutamyl-tRNA reductase family protein	0.02	Orthogroups_2024-Update
At1g58290	No alias	Glutamyl-tRNA reductase 1, chloroplastic...	0.04	Orthogroups_2024-Update
Bradi3g30160	No alias	Glutamyl-tRNA reductase family protein	0.03	Orthogroups_2024-Update
Brara.A02372.1	No alias	glutamyl-tRNA reductase *(HEMA) & EC_1.2 oxidoreductase...	0.03	Orthogroups_2024-Update
GRMZM2G107402	No alias	Glutamyl-tRNA reductase family protein	0.03	Orthogroups_2024-Update
Glyma.02G218300	No alias	Glutamyl-tRNA reductase family protein	0.03	Orthogroups_2024-Update
HORVU7Hr1G026300.4	No alias	glutamyl-tRNA reductase *(HEMA) & EC_1.2 oxidoreductase...	0.03	Orthogroups_2024-Update
Mp1g08320.1	No alias	glutamyl-tRNA reductase	0.02	Orthogroups_2024-Update
Pp1s381_51V6	No alias	glutamyl-trna reductase chloroplast	0.02	Orthogroups_2024-Update
Sopen01g048760	No alias	Glutamyl-tRNAGlu reductase, N-terminal domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008883	glutamyl-tRNA reductase activity	IEA	InterProScan predictions
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050661	NADP binding	IEA	InterProScan predictions
MF	GO:0050662	coenzyme binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006534	cysteine metabolic process	IEP	Predicted GO
BP	GO:0006535	cysteine biosynthetic process from serine	IEP	Predicted GO
BP	GO:0006563	L-serine metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008289	lipid binding	IEP	Predicted GO
MF	GO:0009001	serine O-acetyltransferase activity	IEP	Predicted GO
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016407	acetyltransferase activity	IEP	Predicted GO
MF	GO:0016412	serine O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016413	O-acetyltransferase activity	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
BP	GO:0019344	cysteine biosynthetic process	IEP	Predicted GO
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predicted GO
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006151	Shikm_DH/Glu-tRNA_Rdtase	257	398
IPR015895	4pyrrol_synth_GluRdtase_N	91	241
IPR015896	4pyrrol_synth_GluRdtase_dimer	412	517

External Links

No external refs found!

LOC_Os10g35840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation