1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os10g37370

LOC_Os10g37370


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000180_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os10g37370
Cluster HCCA clusters: cluster_0039

Target Alias Description ECC score Gene Family Method Actions
Bradi2g58691 No alias Function unknown 0.04 Orthogroups_2024-Update
Bradi4g05095 No alias Function unknown 0.01 Orthogroups_2024-Update
LOC_Os02g06750 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g62000 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g29469 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g22660 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os11g05790 No alias expressed protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 641 763
IPR026960 RVT-Znf 421 516
IPR000477 RT_dom 4 133
No external refs found!