LOC_Os10g39130

Description : OsMADS56 - MADS-box family gene with MIKCc type-box, expressed

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os10g39130
Cluster	HCCA clusters: cluster_0083

Target	Alias	Description	ECC score	Gene Family Method
A4A49_07845	No alias	agamous-like mads-box protein agl8	0.02	Orthogroups_2024-Update
A4A49_14235	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_16645	No alias	agamous-like mads-box protein agl11	0.02	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.03	Orthogroups_2024-Update
A4A49_19521	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_20590	No alias	mads-box transcription factor 27	0.04	Orthogroups_2024-Update
A4A49_22632	No alias	floral homeotic protein agamous	0.04	Orthogroups_2024-Update
A4A49_29655	No alias	floral homeotic protein globosa	0.02	Orthogroups_2024-Update
A4A49_35435	No alias	agamous-like mads-box protein agl8	0.02	Orthogroups_2024-Update
At1g24260	No alias	At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]	0.03	Orthogroups_2024-Update
At2g45660	No alias	SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]	0.04	Orthogroups_2024-Update
At3g30260	No alias	AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]	0.02	Orthogroups_2024-Update
At3g57230	No alias	Agamous-like MADS-box protein AGL16...	0.02	Orthogroups_2024-Update
At4g22950	No alias	Agamous-like MADS-box protein AGL19...	0.03	Orthogroups_2024-Update
At5g60910	No alias	Agamous-like MADS-box protein AGL8...	0.03	Orthogroups_2024-Update
Bradi2g38695	No alias	MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Bradi3g57017	No alias	AGAMOUS-like 16	0.02	Orthogroups_2024-Update
Bradi4g34680	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.A00107.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.B03164.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
Brara.C00582.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.C01461.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.C04259.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Brara.E02241.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.G01817.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G03542.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I02486.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J00749.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J01588.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.04	Orthogroups_2024-Update
Brara.K00360.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G171365	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.02	Orthogroups_2024-Update
Glyma.05G050700	No alias	AGAMOUS-like 19	0.03	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.09G266400	No alias	AGAMOUS-like 6	0.04	Orthogroups_2024-Update
Glyma.13G052100	No alias	AGAMOUS-like 8	0.04	Orthogroups_2024-Update
Glyma.18G273600	No alias	AGAMOUS-like 8	0.02	Orthogroups_2024-Update
HORVU1Hr1G029220.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
HORVU1Hr1G047560.2	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
LOC_Os05g11414	No alias	OsMADS58 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g41950	No alias	OsMADS7 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g41960	No alias	OsMADS37 - MADS-box family gene with MIKC* type-box, expressed	0.03	Orthogroups_2024-Update
Mp4g12490.1	No alias	transcription factor (MADS/AGL)	0.03	Orthogroups_2024-Update
PSME_00013164-RA	No alias	(at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all...	0.02	Orthogroups_2024-Update
Potri.003G119700	No alias	AGAMOUS-like 19	0.03	Orthogroups_2024-Update
Potri.004G064300	No alias	K-box region and MADS-box transcription factor family protein	0.04	Orthogroups_2024-Update
Potri.006G048700	No alias	AGAMOUS-like 18	0.03	Orthogroups_2024-Update
Potri.007G073000	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.008G041500	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Potri.009G084200	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Potri.014G074100	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Potri.015G098400	No alias	AGAMOUS-like 19	0.03	Orthogroups_2024-Update
Pp1s209_130V6	No alias	mads-box transcription factor	0.01	Orthogroups_2024-Update
Seita.1G308200.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Seita.3G280400.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Seita.5G036500.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Seita.6G156800.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Seita.6G223400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
Sobic.002G368700.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
Sobic.007G192900.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.009G142500.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.04	Orthogroups_2024-Update
Solyc01g105800	No alias	MADS box transcription factor (AHRD V1 **--...	0.02	Orthogroups_2024-Update
Solyc02g089210	No alias	MADS box transcription factor (AHRD V3.3 *** Q689E7_GENTR)	0.03	Orthogroups_2024-Update
Solyc04g076680	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen02g015950	No alias	K-box region	0.04	Orthogroups_2024-Update
Sopen03g002820	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update
Sopen06g020070	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update
Sopen06g023350	No alias	K-box region	0.02	Orthogroups_2024-Update
Sopen11g012490	No alias	K-box region	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	170

External Links

No external refs found!

LOC_Os10g39130

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation