Solyc08g082910

Description : Dof zinc finger protein (AHRD V3.3 *** W9RTF5_9ROSA)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc08g082910
Cluster	HCCA clusters: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
A4A49_33562	No alias	dof zinc finger protein dof4.6	0.04	Orthogroups_2024-Update
Bradi1g15420	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Bradi2g09720	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
GRMZM2G146283	No alias	TARGET OF MONOPTEROS 6	0.02	Orthogroups_2024-Update
Glyma.07G053900	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.13G352000	No alias	DOF zinc finger protein 1	0.03	Orthogroups_2024-Update
Glyma.19G118000	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
LOC_Os01g48290	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g55610	No alias	dof zinc finger domain containing protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os08g38220	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_83624g0010	No alias	(at5g60200 : 114.0) Encodes a Dof-type transcription...	0.04	Orthogroups_2024-Update
MA_97259g0020	No alias	(at5g62430 : 134.0) Dof-type zinc finger...	0.04	Orthogroups_2024-Update
PSME_00040668-RA	No alias	(at5g02460 : 137.0) Dof-type zinc finger DNA-binding...	0.03	Orthogroups_2024-Update
PSME_00052342-RA	No alias	(at5g62940 : 135.0) HCA2 induces the formation of...	0.03	Orthogroups_2024-Update
Potri.005G149100	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Sobic.001G034300.3	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.002G236600.2	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.004G266200.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Solyc04g070960	No alias	Dof zinc finger protein (AHRD V3.3 - W9S6D3_9ROSA)	0.03	Orthogroups_2024-Update
Sopen00g011530	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen01g039850	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen02g021750	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update
Sopen02g022790	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen02g023480	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen06g022000	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0004665	prephenate dehydrogenase (NADP+) activity	IEP	Predicted GO
CC	GO:0005666	RNA polymerase III complex	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predicted GO
BP	GO:0006570	tyrosine metabolic process	IEP	Predicted GO
BP	GO:0006571	tyrosine biosynthetic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008977	prephenate dehydrogenase (NAD+) activity	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
BP	GO:0016053	organic acid biosynthetic process	IEP	Predicted GO
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predicted GO
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
CC	GO:0030880	RNA polymerase complex	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044283	small molecule biosynthetic process	IEP	Predicted GO
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predicted GO
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predicted GO
CC	GO:1990234	transferase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	39	96

External Links

No external refs found!

Solyc08g082910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation