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  5. LOC_Os11g04680

LOC_Os11g04680


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g04680
Cluster HCCA clusters: cluster_0107

Target Alias Description ECC score Gene Family Method Actions
At3g13228 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
Bradi3g37800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g56300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G164358 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.04G251600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G105900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G080320.4 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g58780 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g43740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g36170 No alias cytokinesis negative regulator RCP1, putative, expressed 0.03 Orthogroups_2024-Update
MA_9328282g0010 No alias (at5g01980 : 161.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00041932-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.005G062400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G065300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.8G172800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G015450.1 No alias gibberellin modification enzyme *(ELA) & EC_1.14... 0.03 Orthogroups_2024-Update
Solyc01g009000 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) 0.02 Orthogroups_2024-Update
Sopen02g034170 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 115 143
IPR001841 Znf_RING 210 252
No external refs found!