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  5. Solyc08g083400

Solyc08g083400


Description : B3 domain-containing protein (AHRD V3.3 *-* W9RW19_9ROSA)


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g083400
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G082227 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Seita.7G211000.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G265200.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 17 121
No external refs found!