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  5. LOC_Os11g09478

LOC_Os11g09478


Description : OsFBX402 - F-box domain containing protein, expressed


Gene families : OG_42_0000187 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g09478
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
At5g40050 No alias Putative F-box protein At5g40050... 0.03 Orthogroups_2024-Update
Bradi4g22862 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.02 Orthogroups_2024-Update
LOC_Os04g39070 No alias OsFBX139 - F-box domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g10230 No alias retrotransposon protein, putative, Ty1-copia subclass, expressed 0.04 Orthogroups_2024-Update
Seita.3G401900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G031700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G152600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G083500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G148400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G148500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 68 106
No external refs found!