1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os11g09670

LOC_Os11g09670


Description : OsFBX409 - F-box domain containing protein, expressed


Gene families : OG_42_0000187 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000187_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g09670
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
Bradi3g54475 No alias F-box/RNI-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g23252 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU3Hr1G003580.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G080050.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os04g12990 No alias OsFBX122 - F-box domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g35970 No alias OsFBL17 - F-box domain and LRR containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g36220 No alias OsFBX198 - F-box domain containing protein, expressed 0.03 Orthogroups_2024-Update
Seita.1G188800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G079201.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G088400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G072600.4 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 19 52
No external refs found!