LOC_Os11g09990

Description : mTERF family protein, expressed

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os11g09990
Cluster	HCCA clusters: cluster_0112

Target	Alias	Description	ECC score	Gene Family Method
444400	No alias	plastid transcriptionally active 15	0.02	Orthogroups_2024-Update
At5g64950	No alias	Emb [Source:UniProtKB/TrEMBL;Acc:Q9LV83]	0.02	Orthogroups_2024-Update
Bradi1g16160	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Bradi1g45361	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Brara.I01477.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
HORVU2Hr1G024310.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU6Hr1G075340.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os07g24090	No alias	mTERF domain containing protein, expressed	0.02	Orthogroups_2024-Update
PSME_00000443-RA	No alias	(at5g64950 : 94.4) Mitochondrial transcription...	0.05	Orthogroups_2024-Update
PSME_00009256-RA	No alias	(at1g62110 : 82.4) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00049593-RA	No alias	(at5g64950 : 87.0) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
PSME_00056620-RA	No alias	(at1g79220 : 139.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
Potri.001G035200	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Pp1s219_66V6	No alias	No description available	0.04	Orthogroups_2024-Update
Seita.4G092000.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G094400.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G095000.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G179800.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc04g072550	No alias	Transcription termination factor, mitochondrial (AHRD...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predicted GO
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predicted GO
BP	GO:0009250	glucan biosynthetic process	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0016759	cellulose synthase activity	IEP	Predicted GO
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
BP	GO:0030243	cellulose metabolic process	IEP	Predicted GO
BP	GO:0030244	cellulose biosynthetic process	IEP	Predicted GO
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
BP	GO:0051273	beta-glucan metabolic process	IEP	Predicted GO
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	96	358

External Links

No external refs found!

LOC_Os11g09990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation