Solyc09g005720

Description : 60S ribosomal protein L23A (AHRD V3.3 *** A0A0B2RCV3_GLYSO)

Gene families : OG_42_0001552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001552_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc09g005720
Cluster	HCCA clusters: Cluster_218

Target	Alias	Description	ECC score	Gene Family Method
271663	No alias	ribosomal protein L23AB	0.08	Orthogroups_2024-Update
A4A49_21337	No alias	60s ribosomal protein l23a	0.04	Orthogroups_2024-Update
A4A49_58225	No alias	60s ribosomal protein l23a	0.07	Orthogroups_2024-Update
A4A49_63547	No alias	60s ribosomal protein l23a	0.11	Orthogroups_2024-Update
A4A49_64626	No alias	60s ribosomal protein l23a	0.09	Orthogroups_2024-Update
At3g55280	No alias	60S ribosomal protein L23a-2...	0.03	Orthogroups_2024-Update
Bradi1g06220	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
Bradi5g14750	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Brara.C02018.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.D00417.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.D02393.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.E00623.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Cre06.g282500	No alias	ribosomal protein L23AA	0.09	Orthogroups_2024-Update
GRMZM2G083253	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
Glyma.02G095000	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Glyma.11G143400	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
Glyma.12G066700	No alias	ribosomal protein L23AB	0.11	Orthogroups_2024-Update
Glyma.13G332700	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
Glyma.15G041500	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
Glyma.18G286400	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
HORVU2Hr1G086360.3	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU2Hr1G086390.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
MA_10430928g0010	No alias	(q9at35\|rl23a_dauca : 175.0) 60S ribosomal protein L23a...	0.05	Orthogroups_2024-Update
Mp2g00570.1	No alias	component RPL23a of LSU proteome component	0.04	Orthogroups_2024-Update
PSME_00022599-RA	No alias	(q9at35\|rl23a_dauca : 186.0) 60S ribosomal protein L23a...	0.05	Orthogroups_2024-Update
Potri.008G050200	No alias	ribosomal protein L23AB	0.08	Orthogroups_2024-Update
Potri.009G027000	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Potri.016G079800	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Pp1s146_96V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.07	Orthogroups_2024-Update
Pp1s46_72V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.13	Orthogroups_2024-Update
Pp1s47_274V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.1	Orthogroups_2024-Update
Seita.1G230300.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.7G156000.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Sobic.006G137100.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Sobic.010G060500.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Solyc10g084610	No alias	60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)	0.04	Orthogroups_2024-Update
Solyc10g086330	No alias	60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)	0.05	Orthogroups_2024-Update
Sopen09g001610	No alias	Ribosomal protein L23, N-terminal domain	0.13	Orthogroups_2024-Update
Sopen10g035710	No alias	Ribosomal protein L23, N-terminal domain	0.06	Orthogroups_2024-Update
evm.model.contig_3754.2	No alias	(q07761\|rl23a_tobac : 174.0) 60S ribosomal protein L23a...	0.13	Orthogroups_2024-Update
evm.model.tig00000037.39	No alias	(q07761\|rl23a_tobac : 188.0) 60S ribosomal protein L23a...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	IEP	Predicted GO
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0007049	cell cycle	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0016579	protein deubiquitination	IEP	Predicted GO
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Predicted GO
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Predicted GO
MF	GO:0019107	myristoyltransferase activity	IEP	Predicted GO
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
BP	GO:0070646	protein modification by small protein removal	IEP	Predicted GO
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005633	Ribosomal_L23/L25_N	14	63
IPR013025	Ribosomal_L25/23	73	136

External Links

No external refs found!

Solyc09g005720

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation