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  5. LOC_Os11g14980

LOC_Os11g14980


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g14980
Cluster HCCA clusters: cluster_0109

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G018170.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os11g10740 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 86 134
IPR002885 Pentatricopeptide_repeat 191 221
IPR002885 Pentatricopeptide_repeat 292 320
IPR002885 Pentatricopeptide_repeat 162 183
IPR002885 Pentatricopeptide_repeat 468 491
IPR002885 Pentatricopeptide_repeat 263 289
No external refs found!