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  5. LOC_Os11g17540

LOC_Os11g17540


Description : retrotransposon protein, putative, Ty1-copia subclass, expressed


Gene families : OG_42_0000839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g17540
Cluster HCCA clusters: cluster_0012

Target Alias Description ECC score Gene Family Method Actions
Bradi2g25990 No alias alpha/beta-Hydrolases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G255900 No alias alpha/beta-Hydrolases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G018500 No alias alpha/beta-Hydrolases superfamily protein 0.02 Orthogroups_2024-Update
Pp1s285_15V6 No alias endo- - -beta-d- 0.02 Orthogroups_2024-Update
Seita.3G250600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G251000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g032000 No alias Dienelactone hydrolase family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR002925 Dienelactn_hydro 69 278
No external refs found!