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LOC_Os11g26910


Description : SKP1-like protein 1B, putative, expressed


Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g26910
Cluster HCCA clusters: cluster_0049

Target Alias Description ECC score Gene Family Method Actions
At1g75950 No alias SKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255] 0.03 Orthogroups_2024-Update
MA_82940g0020 No alias (at5g42190 : 196.0) Similar to SKP1 in yeast and humans... 0.02 Orthogroups_2024-Update
Sobic.002G280200.1 No alias ASK-type linker component of SCF E3 ubiquitin ligase complexes 0.03 Orthogroups_2024-Update
Solyc11g042930 No alias SKP1 (AHRD V3.3 *** Q68GS0_TOBAC) 0.03 Orthogroups_2024-Update
evm.model.tig00001187.19 No alias (at5g42190 : 173.0) Similar to SKP1 in yeast and humans... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 124 171
IPR016073 Skp1_comp_POZ 8 67
No external refs found!