Solyc09g007810

Description : Auxin Response Factor 16A

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc09g007810
Cluster	HCCA clusters: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
At4g30080	No alias	Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]	0.03	Orthogroups_2024-Update
Brara.B00905.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.04	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.K00731.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G437460	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.15G078800	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
HORVU2Hr1G109650.18	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
Pp1s14_392V6	No alias	arf1-binding protein	0.03	Orthogroups_2024-Update
Pp1s163_119V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Pp1s65_227V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.3G028100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sopen07g021880	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen08g004260	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Predicted GO
CC	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Predicted GO
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
CC	GO:0044448	cell cortex part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
CC	GO:0099023	tethering complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	287	370
IPR003340	B3_DNA-bd	121	222

External Links

No external refs found!

Solyc09g007810

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation