1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g007850

Solyc09g007850


Description : RNA binding protein (AHRD V3.3 *** Q39209_ARATH)


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g007850
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.03 Orthogroups_2024-Update
Brara.I03035.1 No alias plastidial ribonucleoprotein *(CP29) 0.02 Orthogroups_2024-Update
GRMZM2G068715 No alias chloroplast RNA-binding protein 29 0.03 Orthogroups_2024-Update
HORVU1Hr1G009390.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G083830.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00050_0340 kfl00050_0340_v1.1 (q08937|roc2_nicsy : 179.0) 29 kDa ribonucleoprotein B,... 0.02 Orthogroups_2024-Update
Potri.006G127200 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Potri.016G090700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Seita.9G388600.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Sobic.001G357200.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
Sobic.002G386400.1 No alias plastidial ribonucleoprotein *(CP29) 0.02 Orthogroups_2024-Update
Sopen09g002690 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.11 Orthogroups_2024-Update
Sopen10g035530 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 207 277
IPR000504 RRM_dom 102 172
No external refs found!