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  5. LOC_Os11g29950

LOC_Os11g29950


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g29950
Cluster HCCA clusters: cluster_0126

Target Alias Description ECC score Gene Family Method Actions
A4A49_20443 No alias putative mitochondrial protein 0.03 Orthogroups_2024-Update
LOC_Os10g01440 No alias retrotransposon protein, putative, Ty1-copia subclass 0.03 Orthogroups_2024-Update
LOC_Os10g30510 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc08g063060 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g010850 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g027030 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g005350 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g009580 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen02g014900 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g027810 No alias gag-polypeptide of LTR copia-type 0.02 Orthogroups_2024-Update
Sopen11g013360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g018860 No alias gag-polypeptide of LTR copia-type 0.02 Orthogroups_2024-Update
Sopen11g023560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g004240 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g009490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR013103 RVT_2 159 400
No external refs found!