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  5. Solyc09g008040

Solyc09g008040


Description : Sigma factor (AHRD V3.3 *** A0A0G2STR6_9ROSI)


Gene families : OG_42_0001174 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g008040
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
A4A49_06860 No alias rna polymerase sigma factor sigb 0.04 Orthogroups_2024-Update
Bradi4g19540 No alias RNApolymerase sigma subunit 2 0.03 Orthogroups_2024-Update
Kfl00030_0310 kfl00030_0310_v1.1 (at1g08540 : 208.0) Enodes a subunit of chloroplast RNA... 0.02 Orthogroups_2024-Update
MA_10429585g0010 No alias (at1g08540 : 320.0) Enodes a subunit of chloroplast RNA... 0.04 Orthogroups_2024-Update
Mp4g13380.1 No alias basal transcription factor (Sigma) 0.02 Orthogroups_2024-Update
Potri.006G234400 No alias RNApolymerase sigma-subunit C 0.07 Orthogroups_2024-Update
Pp1s34_387V6 No alias rna polymerase sigma factor 0.02 Orthogroups_2024-Update
Seita.8G112700.1 No alias basal Sigma-type transcription factor 0.03 Orthogroups_2024-Update
Sopen01g033050 No alias Sigma-70, region 4 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0016987 sigma factor activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0007005 mitochondrion organization IEP Predicted GO
BP GO:0007006 mitochondrial membrane organization IEP Predicted GO
BP GO:0007008 outer mitochondrial membrane organization IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0045040 protein import into mitochondrial outer membrane IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 408 481
IPR007627 RNA_pol_sigma70_r2 327 396
IPR007630 RNA_pol_sigma70_r4 495 548
No external refs found!