LOC_Os11g32110

Description : auxin response factor, putative, expressed

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os11g32110
Cluster	HCCA clusters: cluster_0113

Target	Alias	Description	ECC score	Gene Family Method
117217	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
181406	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
A4A49_18499	No alias	auxin response factor 19	0.03	Orthogroups_2024-Update
A4A49_21432	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
At1g59750	No alias	Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]	0.03	Orthogroups_2024-Update
At5g20730	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Bradi1g33160	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
Bradi5g27400	No alias	auxin response factor 17	0.01	Orthogroups_2024-Update
Brara.A02353.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.B00905.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.04	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F01415.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G01369.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G02608.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I04264.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J01551.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
GRMZM2G035405	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
GRMZM2G102845	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
GRMZM2G116557	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
GRMZM2G338259	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
GRMZM2G390641	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
GRMZM2G437460	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
GRMZM2G441325	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
GRMZM2G475263	No alias	auxin response factor 11	0.04	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.01G002100	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.08G027800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.09G072200	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.11G204200	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.13G140600	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.15G078800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
LOC_Os01g70270	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
MA_10432349g0010	No alias	(at5g62000 : 394.0) Encodes an auxin response factor....	0.02	Orthogroups_2024-Update
Mp1g12750.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
Mp4g11820.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.03	Orthogroups_2024-Update
PSME_00022730-RA	No alias	(at5g62000 : 783.0) Encodes an auxin response factor....	0.02	Orthogroups_2024-Update
PSME_00023239-RA	No alias	(at1g30330 : 665.0) Encodes a member of the auxin...	0.04	Orthogroups_2024-Update
PSME_00050564-RA	No alias	(at2g28350 : 502.0) Involved in root cap cell...	0.02	Orthogroups_2024-Update
Potri.002G172500	No alias	auxin response factor 11	0.02	Orthogroups_2024-Update
Potri.002G207050	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Potri.003G142100	No alias	auxin response factor 9	0.03	Orthogroups_2024-Update
Potri.004G078200	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
Potri.006G138500	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Potri.009G014800	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Pp1s339_47V6	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Pp1s86_1V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.7G108100.1	No alias	ARF-type transcription factor	0.05	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.003G003800.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.010G236300.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Solyc05g047460	No alias	Auxin Response Factor 7B	0.03	Orthogroups_2024-Update
Solyc08g082630	No alias	Auxin Response Factor 9A	0.02	Orthogroups_2024-Update
Solyc09g007810	No alias	Auxin Response Factor 16A	0.02	Orthogroups_2024-Update
Solyc11g013480	No alias	Auxin Response Factor 17	0.02	Orthogroups_2024-Update
Solyc12g042070	No alias	Auxin Response Factor 2B	0.02	Orthogroups_2024-Update
Sopen01g039790	No alias	AUX/IAA family	0.02	Orthogroups_2024-Update
Sopen08g004260	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen09g002650	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003872	6-phosphofructokinase activity	IEP	Predicted GO
MF	GO:0004061	arylformamidase activity	IEP	Predicted GO
MF	GO:0004133	glycogen debranching enzyme activity	IEP	Predicted GO
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Predicted GO
MF	GO:0004865	protein serine/threonine phosphatase inhibitor activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006568	tryptophan metabolic process	IEP	Predicted GO
BP	GO:0006569	tryptophan catabolic process	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006586	indolalkylamine metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008443	phosphofructokinase activity	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predicted GO
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Predicted GO
BP	GO:0009310	amine catabolic process	IEP	Predicted GO
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0010921	regulation of phosphatase activity	IEP	Predicted GO
BP	GO:0010923	negative regulation of phosphatase activity	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0019200	carbohydrate kinase activity	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019212	phosphatase inhibitor activity	IEP	Predicted GO
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predicted GO
BP	GO:0019439	aromatic compound catabolic process	IEP	Predicted GO
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
BP	GO:0031399	regulation of protein modification process	IEP	Predicted GO
BP	GO:0031400	negative regulation of protein modification process	IEP	Predicted GO
BP	GO:0032515	negative regulation of phosphoprotein phosphatase activity	IEP	Predicted GO
BP	GO:0035303	regulation of dephosphorylation	IEP	Predicted GO
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predicted GO
BP	GO:0035305	negative regulation of dephosphorylation	IEP	Predicted GO
BP	GO:0035308	negative regulation of protein dephosphorylation	IEP	Predicted GO
BP	GO:0042180	cellular ketone metabolic process	IEP	Predicted GO
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Predicted GO
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042436	indole-containing compound catabolic process	IEP	Predicted GO
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Predicted GO
BP	GO:0043086	negative regulation of catalytic activity	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predicted GO
BP	GO:0044092	negative regulation of molecular function	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	Predicted GO
BP	GO:0046218	indolalkylamine catabolic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0046700	heterocycle catabolic process	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0050790	regulation of catalytic activity	IEP	Predicted GO
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0051336	regulation of hydrolase activity	IEP	Predicted GO
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Predicted GO
BP	GO:0065009	regulation of molecular function	IEP	Predicted GO
BP	GO:0070189	kynurenine metabolic process	IEP	Predicted GO
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	771	810
IPR010525	Auxin_resp	275	357
IPR003340	B3_DNA-bd	149	250

External Links

No external refs found!

LOC_Os11g32110

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation